PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g06160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 382aa    MW: 42962.1 Da    PI: 6.886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g06160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.6e-31219277259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YY+C+++  C ++k+ver+++dp+++++tY+ eHnh+
  CA10g06160 219 SDMWSWRKYGQKPIKGSPYPRGYYKCSTSkACLARKQVERNRSDPNMFIVTYTAEHNHP 277
                 79************************99889***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-30208279IPR003657WRKY domain
PROSITE profilePS5081134.532213279IPR003657WRKY domain
SuperFamilySSF1182906.15E-26216279IPR003657WRKY domain
SMARTSM007741.4E-35218278IPR003657WRKY domain
PfamPF031062.9E-25220277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEDWDLHAV VRSCTPANTA STTTNDCDLV HGILKVDGAL MKSLRIEKDY RQFDNDQMTL  60
QRGSTTTSCN PTNNIHYLCS FQPRPNDNNN NSLFCFKDLL EQRILTTNSA TDFEESHELC  120
KPFFTASESL TISSPRRGLP ISPISVLGRL QDLPPSSQQQ QQQHLHQLTN TKPIQPKRPL  180
SSLNGSITNC TLHAQSSRTK RRKNQLKKVC QVAADALSSD MWSWRKYGQK PIKGSPYPRG  240
YYKCSTSKAC LARKQVERNR SDPNMFIVTY TAEHNHPMPT HRNSLAGISR HKTANPNKPT  300
SLSPATNSPA PENQESSRDD KEDIFEDDDD EFGKTEPDDD FFDGLDELVI QATGDSLPEK  360
FSGTLQFPWL VNNAAXXXWL T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-172172791677Probable WRKY transcription factor 4
2lex_A4e-172172791677Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754496e-82HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545773.10.0PREDICTED: WRKY transcription factor 22-like
SwissprotO046095e-67WRK22_ARATH; WRKY transcription factor 22
TrEMBLK4CYG81e-109K4CYG8_SOLLC; Uncharacterized protein
STRINGSolyc10g011910.2.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-66WRKY family protein